Age and origin of enigmatic megaherbs from the subantarctic islands

Biogeographic relationships in the southern hemisphere have puzzled biologists for the last two centuries. Once joined to form the supercontinent Gondwana, Africa, Antarctica, Australia, New Zealand and South America are widely separated by the Pacific and Indian oceans. Sir Joseph Hooker was the first to suggest that Antarctica served as a corridor for plant migration not unlike the land-bridges in the northern hemisphere. While the Antarctic flora was largely erased by glaciation during the Pleistocene, at least some of these Antarctic plant communities found refuge on the subantarctic islands. Here we provide support for the hypothesis that giant herbs persisted in the subantactic islands prior to the onset of Pleistocene glaciation, then dispersed northward in response to glacial advance. Our findings provide further evidence that Antarctica has played a pivotal role in shaping southern hemisphere biogeography

Causal Dependence Tree Approximations of Joint Distributions for Multiple Random Processes

We investigate approximating joint distributions of random processes with causal dependence tree distributions. Such distributions are particularly useful in providing parsimonious representation when there exists causal dynamics among processes. By extending the results by Chow and Liu on dependence tree approximations, we show that the best causal dependence tree approximation is the one which maximizes the sum of directed informations on its edges, where best is defined in terms of minimizing the KL-divergence between the original and the approximate distribution. Moreover, we describe a low-complexity algorithm to efficiently pick this approximate distribution.Comment: 9 pages, 15 figure

CMV-Specific CD8 T Cell Differentiation and Localization: Implications for Adoptive Therapies.

Human cytomegalovirus (HCMV) is a ubiquitous virus that causes chronic infection and, thus, is one of the most common infectious complications of immune suppression. Adoptive transfer of HCMV-specific T cells has emerged as an effective method to reduce the risk for HCMV infection and/or reactivation by restoring immunity in transplant recipients. However, the CMV-specific CD8(+) T cell response is comprised of a heterogenous mixture of subsets with distinct functions and localization, and it is not clear if current adoptive immunotherapy protocols can reconstitute the full spectrum of CD8(+) T cell immunity. The aim of this review is to briefly summarize the role of these T cell subsets in CMV immunity and to describe how current adoptive immunotherapy practices might affect their reconstitution in patients. The bulk of the CMV-specific CD8(+) T cell population is made up of terminally differentiated effector T cells with immediate effector function and a short life span. Self-renewing memory T cells within the CMV-specific population retain the capacity to expand and differentiate upon challenge and are important for the long-term persistence of the CD8(+) T cell response. Finally, mucosal organs, which are frequent sites of CMV reactivation, are primarily inhabited by tissue-resident memory T cells, which do not recirculate. Future work on adoptive transfer strategies may need to focus on striking a balance between the formation of these subsets to ensure the development of long lasting and protective immune responses that can access the organs affected by CMV disease

An Advanced, Three-Dimensional Plotting Library for Astronomy

We present a new, three-dimensional (3D) plotting library with advanced features, and support for standard and enhanced display devices. The library - S2PLOT - is written in C and can be used by C, C++ and FORTRAN programs on GNU/Linux and Apple/OSX systems. S2PLOT draws objects in a 3D (x,y,z) Cartesian space and the user interactively controls how this space is rendered at run time. With a PGPLOT inspired interface, S2PLOT provides astronomers with elegant techniques for displaying and exploring 3D data sets directly from their program code, and the potential to use stereoscopic and dome display devices. The S2PLOT architecture supports dynamic geometry and can be used to plot time-evolving data sets, such as might be produced by simulation codes. In this paper, we introduce S2PLOT to the astronomical community, describe its potential applications, and present some example uses of the library.Comment: 12 pages, 10 eps figures (higher resolution versions available from http://astronomy.swin.edu.au/s2plot/paperfigures). The S2PLOT library is available for download from http://astronomy.swin.edu.au/s2plo

The impact of different rainfall products on landscape modelling simulations

Rainfall products can contain significantly different spatiotemporal estimates, depending on their underlying data and final constructed resolution. Commonly used products, such as rain gauges, rain gauge networks, and weather radar, differ in their information content regarding intensities, spatial variability, and natural climatic variability, therefore producing different estimates. Landscape evolution models (LEMs) simulate the geomorphic changes in landscapes, and current models can simulate timeframes from event level to millions of years and some use rainfall inputs to drive them. However, the impact of different rainfall products on LEM outputs has never been considered. This study uses the STREAP rainfall generator, calibrated using commonly used rainfall observation products, to produce longer rainfall records than the observations to drive the CAESAR‐Lisflood LEM to examine how differences in rainfall products affect simulated landscapes. The results show that the simulation of changes to basin geomorphology is sensitive to the differences between rainfall products, with these differences expressed linearly in discharges but non‐linearly in sediment yields. Furthermore, when applied over a 1500‐year period, large differences in the simulated long profiles were observed, with the simulations producing greater sediment yields showing erosion extending further downstream. This suggests that the choice of rainfall product to drive LEMs has a large impact on the final simulated landscapes. The combination of rainfall generator model and LEMs represents a potentially powerful method for assessing the impacts of rainfall product differences on landscapes and their short‐ and long‐term evolution

Factorial Switching Kalman Filters for Condition Monitoring in Neonatal Intensive Care

The observed physiological dynamics of an infant receiving intensive care are affected by many possible factors, including interventions to the baby, the operation of the monitoring equipment and the state of health. The Factorial Switching Kalman Filter can be used to infer the presence of such factors from a sequence of observations, and to estimate the true values where these observations have been corrupted. We apply this model to clinical time series data and show it to be effective in identifying a number of artifactual and physiological patterns